PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635711.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 257aa    MW: 29830.2 Da    PI: 10.0556
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635711.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-121461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
   XP_013635711.1 14 RGPWSIEEDHRLMNFILHNGIHCWRIVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP

2Myb_DNA-binding52.88.9e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T  E++++ +++ qlG++ W++Ia+++  gRt++++k++w+k
   XP_013635711.1  67 RGGFTDAEEDRIMELHSQLGNR-WSKIASHFS-GRTDNEIKNHWNK 110
                      788*******************.*********.***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-19564IPR009057Homeodomain-like
PROSITE profilePS5129413.642961IPR017930Myb domain
SuperFamilySSF466892.6E-2711108IPR009057Homeodomain-like
SMARTSM007172.0E-51363IPR001005SANT/Myb domain
PfamPF002495.4E-111461IPR001005SANT/Myb domain
CDDcd001671.91E-41661No hitNo description
PROSITE profilePS5129425.24562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2465117IPR009057Homeodomain-like
SMARTSM007175.8E-1466114IPR001005SANT/Myb domain
PfamPF002493.3E-1467110IPR001005SANT/Myb domain
CDDcd001671.54E-970109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRKPCCDKI GLRRGPWSIE EDHRLMNFIL HNGIHCWRIV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TDAEEDRIME LHSQLGNRWS KIASHFSGRT DNEIKNHWNK KIKKKMKHLG  120
LNPATHEPMN NITNQPQSMQ ITKPNMCFYH QRKRRNKGST KRYDVIIETK KTSIISNNDE  180
LLLAKNCKTL YAEEVDIRPL FKMQGNETSV SSLPSLYSNI SRSEYSSYLA EDSISLEQMG  240
FDRYDGSFGT MGPLHQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151161RKRRNKGSTKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635711.10.0PREDICTED: protein ODORANT1-like
SwissprotQ50EX62e-67ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0D3BWH40.0A0A0D3BWH4_BRAOL; Uncharacterized protein
STRINGAT5G14340.11e-124(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-114myb domain protein 40